Cofactor Genomics

Cofactor Member Papers

Cofactor Genomics is a young team of scientists with a history of many publications in the last 10 years. These range from the original sequencing of the AML cancer, platypus, macaque, and human genomes to applications such as whole-genome resequencing, transcriptome and traditional EST analysis, assembly, and plant-microbe and plant-herbicide interactions.

Members:

Matt Hickenbotham

Dr. Jarret Glasscock

Jon Armstrong

Jin Zhu

Brandi Chiapelli

Matt Hickenbotham

The value of avian genomics to the conservation of wildlife

DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome.

Whole-genome sequencing and variant discovery in C. elegans.

Gallus GBrowse: a unified genomic database for the chicken.

Extending assembly of short DNA sequences to handle error.

Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach.

Generation and annotation of the DNA sequences of human chromosomes 2 and 4.

Viral discovery and sequence recovery using DNA microarrays.

The DNA sequence of human chromosome 7.

Dr. Jarret Glasscock

The value of avian genomics to the conservation of wildlife

DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome.

Whole-genome sequencing and variant discovery in C. elegans.

Gallus GBrowse: a unified genomic database for the chicken.

Genome analysis of the platypus reveals unique signatures of evolution.

An ORFeome-based analysis of human transcription factor genes and the construction of a microarray to interrogate their expression.

Molecular properties of adult mouse gastric and intestinal epithelial progenitors in their niches.

Evolutionary toggling of the MAPT 17q21.31 inversion region.

Evolutionary and biomedical insights from the rhesus macaque genome.

UTR reconstruction and analysis using genomically aligned EST sequences.

Jon Armstrong

Contribution of genetically restricted, methicillin-susceptible strains to the ongoing epidemic of community-acquired Staphylococcus aureus infections.

Panton-Valentine Leukocidin-positive methicillin-resistant Staphylococcus aureus lung infection in patients with cystic fibrosis.

Glutamate regulates neurite outgrowth of cultured descending brain neurons from larval lamprey.

Expression of a bcr-1 isoform of RARalpha-PML does not affect the penetrance of acute promyelocytic leukemia or the acquisition of an interstitial deletion on mouse chromosome 2.

Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach.

Blinded comparison of repetitive-sequence PCR and multilocus sequence typing for genotyping methicillin-resistant Staphylococcus aureus isolates from a children’s hospital in St. Louis, Missouri.

A Drosophila model of multiple endocrine neoplasia type 2.

Axonal regeneration of descending and ascending spinal projection neurons in spinal cord-transected larval lamprey.

Generation and annotation of the DNA sequences of human chromosomes 2 and 4.

Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.

Jin Zhu

Transcriptome  response to glyphosate in sensitive and resistant soybean.

Expression profiling soybean response to Pseudomonas syringae reveals new defense-related genes and rapid HR-specific downregulation of photosynthesis.

Brandi Chiapelli

Generation and analysis of 280,000 human expressed sequence tags.

Genome Sequence of the Nematode Caenorhabditis elegans. A Platform for Investigating Biology Science.

Initial sequencing and analysis of the human genome.

Comparative genomics of gene expression in the parasitic and free-living nematodes: Strongyloides stercoralis and Caenorhabditis elegans.

Analysis and functional classification of transcripts from the nematode Meloidogyne incognita.

Phosphoethanolamine N-methyltransferase (PMT-1) catalyzes the first reaction of a new pathway for phosphocholine biosynthesis in Caenorhabditis elegans.

Nematode PAN and ZP receptor-like sequences.

Methods and Compositions for Root Knot Nematode control